Result cytoscape example data :

  • 5. CYTOSCAPE ESSENTIALS: NETWORK, NODE- AND EDGE-ATTRIBUTE files

    Understanding of the compatible files that can be imported and used by Cytoscape is essential for producing network images.

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  • Working with Gene Expression Data in Cytoscape

    This is a tutorial demonstrating how to work with gene expression data in Cytoscape.

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  • Importing time series from SOFT file with Cytoscape data series plugin.

    Tutorial for using SOFT files from gene expression omnibus with the cy-dataseries plugin (https://github.com/martincerny/cy-dataseries/wiki) Download the ...

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  • Cytoscape Demo

    This is a demo I made for a class a few years ago. Unfortunately my work and research interests are not in this area and I don't use this software at all so I don't ...

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  • FunRich: Import Excel File and Generate Interaction Diagram

    This tutorial series demonstrates how to use FunRich tool available at funrich.org. this video shows how can user import Gene or protein to FunRich from Excel ...

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  • Loading data into Cytoscape 3 from GenomeSpace

    This is Step 7 of the recipe, "Find subnetworks of differentially expressed genes": ...

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  • Diagrama de redes com Cytoscape

    Como fazer um diagrama de redes (ou fluxos) com o ótimo Cytoscape. É simples, free e open source. http://cytoscape.org/ How to create network graphics from ...

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  • MetScape App for Cytoscape: Creating and Viewing Correlation Networks

    HTML Video Transcript: https://sites.google.com/a/umich.edu/thltranscripts/metscape-app-for-cytoscape-creating-and-viewing-correlation-networks.

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  • 3. CYTOSCAPE ESSENTIALS: network analysis, colouring edges, making edges dissapear

    The CYTOSCAPE HELPDESK google group is a very useful source for any more detailed information in regard to Cytoscape usage.

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  • Coloring Nodes by Fold-Change in Cytoscape 3.0

    This video is based on a tutorial presented by Melissa Cline at the UNC Charlotte 2013 Workshop in Next-Generation Sequencing and Metabolomics.

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  • 13. Network analysis of Expression data - (Practical Session)

    Lecture by professor Tom Freeman. Filmed during a half-day training course held at The Roslin Institute, January 2015. (Recommended YouTube playback ...

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  • Use of Citoscape.js for Client project

    Citoscape.js has been used to display in a force layout graph information taken from .json file - Arbor extension has been used to bring fluency and some ...

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  • Graphical identification of cancer-associated gene subnetworks based on small proteomics data sets

    This video is a supplemental file of original research article published by OMICS: A Journal for Integrative Biology (http://www.liebertpub.com/OMI). Proteomics is ...

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  • Cytoscape

    http://www.abnova.com ) - Cytoscape is an open source bioinformatics software platform for visualizing molecular interaction networks and biological pathways ...

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  • Cytoscape in to Pipulate for Website Visualization

    My next Pipulate trick will be drawing website visualizations based on crawl data.

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  • Network Analysis Tutorial: Network Visualization

    This is the 3rd video of chapter 1 of Network Analysis by Eric Ma. Take Eric's course: https://www.datacamp.com/courses/network-analysis-in-python-part-1 From ...

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  • Cytoscape 3.3 Workflow cy3sbml

    Working with multiple network views and Results Panel & Table Panel.

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  • It's a sample Power system visualization of dynamic network using Cytoscape and dynn network

    I am working on dynamic visualization of Power system data generated from MATLAB bus system by varying loads and generation. I created a sample ...

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  • Tutorial 2. Molecular Networking in GNPS Part 2

    A tutorial how to visualize GNPS molecular networking through Cytoscape gnps.ucsd.edu Tutorial: Cliff Kapono.

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  • cytoscape

    AXIN1, ERK1 és IGF1R fehérjék hálózati kapcsolatai.

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  • Using Revigo to visualize DAVID data

    Taking gene lists from DAVID and using Revigo to visualize.

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  • Visualize Large network in 3DScapeCS

    Sample data "BINDhuman.sif" with 19905 nodes and 31704 edges is loaded in Cytoscape. It takes several minutes for Ubigraph to complete the layout, yet it's ...

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  • Tutorial 2. Molecular Networking in GNPS Part 1

    The Data Analysis portal will allow you to organize and visualize your mass spectrometry data. Leveraging the molecular networking techniques, there are ...

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  • Playing with Cytoscape.js

    1-10 random nodes, every node has a 50% chance to have an edge with another.

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  • MiMI Plugin for Cytoscape

    MiMI (Michigan Molecular Interactions) plugin for Cytoscape, presented by David States, senior scientist at NCIBI (National Center for Integrative Biomedical ...

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  • Cytoscape.js cose-bilkent demo

    Demonstration of the cose-bilkent layout being applied to a "reblog" dataset in tumblrgraph2 http://cmdcolin.github.io/tumblrgraph2/

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  • Tutorial 1: Upload data to GNPS public server MassIVE

    Submit your own data to be made public MassIVE datasets. These MassIVE datasets must be prefixed with GNPS to be visible to other GNPS users.

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  • Converting Expression Data into a GenePattern input file format

    How to convert expression data (.cel files) into GenePattern input file (.gct) formats.

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  • Cytoscape.js tumblr reblogs

    Example export of the tumblrgraph2 app.

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  • Evolution of cytoscape.js (Gource Visualization)

    Gource visualization of cytoscape.js (https://github.com/cytoscape/cytoscape.js). Graph theory (a.k.a. network) library for analysis and visualisation (compatible ...

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  • Dynamic networks in Cytoscape 3.0, code development

    Code development of DynNetwork, a plugin to visualize dynamic graphs in Cytoscape 3.0. The git repository log is displayed with the software Gource.

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  • Force-Directed Layout Tutorial « AllegroLayout | Cytoscape 3 App

    This tutorial helps you to understand how force-directed layout works and the characteristics of the layouts supported by AllegroLayout. For more information ...

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  • iGraph tutorial

    igraph tutorial in R.

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  • Tinkering with Cytoscape - November 2017

    http://www.cytoscape.org (Sample data found using Google) - Requires Java 8: I used the following tutorial in order to install on Ubuntu 16.04 (Xenial Xerus) ...

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  • TiCoNE: Cytoscape App 1.2 - Screencast - Cluster Connectivity & Clustering Comparison

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  • GLay Screencast. Cytoscape/Google Summer of Code 2008 [2/2]

    Part two of the screencast.

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  • Introduction to Cytoscape (Part 1 of 2)

    Online tutorial about Cytoscape software for ITL-207 Networking Foundations course at Washington & Jefferson College.

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  • Cytoscape JavaFX GUI

    Short overview over HTML/JS/CSS integration with Cytoscape 3. The featured app is available from the Cytoscape app store ...

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  • Cytoscape plugin for venn diagrams (venn-cytoscape-plugin)

    Cytoscape plugin for venn diagrams, version 0.2 released 13 Aug 2010. http://www.dishevelled.org/venn-cytoscape-plugin The plugin provides a diagram view ...

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  • Cytoscape

    This video is about Cytoscape and UCSF Chimera.

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  • Visualizing Sequence Relationships in Large Groups of Enzymes Using SFLD and Cytoscape 3.0

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  • 4. CYTOSCAPE ESSENTIALS: extracting the node coordinates, importing the node coordinates

    The CYTOSCAPE HELPDESK google group is a very useful source for any more detailed information in regard to Cytoscape usage.

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  • Installing SemScape

    SemScape is Cytoscape App to visualize smenatic linked data landscapes in Cytoscape.

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  • Animated 10-point multi-graph (Cytoscape.js)

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  • Identifying highly connected subnetworks using the MCODE module in Cytoscape 2

    This is Step 9 of the recipe, "Find subnetworks of differentially expressed genes": ...

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  • BioGRID Network Viewer Tutorial

    A simple introduction to the BioGRID network viewer and its various features.

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  • Cytoscape.js Navigation Panel demo

    Latest code here: https://github.com/cytoscape/cytoscape.js-navigator Updated version is here http://www.youtube.com/watch?v=vGmPK74e8bI Cytoscape.js ...

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  • Trey Ideker: Visualizing Gene and Protein Networks

    Copyright Broad Institute, 2013. All rights reserved. Trey Ideker (http://www.idekerlab.ucsd.edu) discusses methods for visualizing high-throughput ...

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  • 2.importation des données pour analyse de Gene Ontologie Cytoscape

    Aide à l'importation de donnée pour une analyse de Gene Ontologie.

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  • How to write edge information in a file : Networkx Tutorial # 3

    This video will show how you can store your graph in form of edge list in a file.

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